List of modules from raijin:/projects/access/modules for apps in raijin:/projects/access/apps Note there are a small number of applications in ~access/apps without modules, see list at bottom of page ||= '''Module Name''' =||= '''Versions''' =||= '''Owner''' =||= '''!Action/Notes''' =||= '''Status''' =|| ||=DEPRECATED =|| 2 || wml548 || Deprecated - to delete || || ||=ancil-utils =|| 1 || wml548 || Required - ancillary production for ASCA, canopy height and etc || canopy_height, varGrid.py OK, ASCAT not working: no conv2nc || ||=ants =|| 8 || wml548 || 0.8.0, 0.9.0, 0.10.0 0.11.0 and 0.12.0 installed on Gadi || 0.8.0 under testing || ||=bufrdc =|| 1 || || || || ||=cap =|| 9 || mrd599, wml548 ||Required for ancil generation -saw; 9.1 ported-wml548 || works for everything except the climatology dataset for variable grids; [[BR]] temporary solution: using raijin image technology & cap9.1 copy of Raijin || ||=cawcr-utils =|| 1 || ttl548 || Required - various BoM utils || || ||=cdat-lite =|| 4 || ||Is this in conda? -saw || cdat6 in bom_envs/python_2.7.16-lwenming || ||=cmake =|| 1 || ||Should be a central module -saw || || ||=cms =|| 1 ||clex || Delteted || || ||=conda =|| 1 || wml548 || See miniconda || || ||=cylc =|| 1 || ||Required || || ||=drhook =|| 5 || ||Required || || ||=dummygrib =|| 1 || ||Required || || ||=ecbuild =|| 1 || ttl548 || Required to build some EC software || || ||=eccodes =|| 1 || ||Central module. Required for UM >= vn 11.2 || || ||=emos340 =|| 1 || ttl548 || Required for GRIB1/BUFR, ../apps/emos to be deleted || || ||=fcm =|| 17 || ||Required || || ||=fftw =|| 1 || ttl548 ||Central module || || ||=gcom =|| 97 || ||Required - new versions needed for Gadi mpi || || ||=geos =|| 1 || || Only required by iris/cartopy? || || ||=grib-api =|| 5 || ttl548 ||Central module. Requried for UM <= vn 11.1 || || ||=hdf5 =|| 1 || ||Central module || || ||=imagej =|| 1 || aph502 || Deprecated - to delete || || ||=iris =|| 6 || ||Available in Conda || || ||=java =|| 2 || wml548 ||Central module: required by trui || java8 works so not required || ||=libmo_unpack =|| 1 || || Only used by iris so now replaced by conda || || ||=libpng =|| 1 || || || || ||=magics++ =|| 1 || ttl548 || Required for Metview, ../apps/magics2 to be deleted || || ||=mars =|| 6 || ttl548 || Required for mars-like interface to grib archive || || ||=mdssdiff =|| 1 || CLEX || Now in conda - deleted || || ||=metview =|| 1 || ttl548 || Required || || ||=miniconda =|| 5 || wml548 || 4.3, 4.4, 4.5, 4.6, 4.7 and latest=>4.8 installed || || ||=miniconda3 =|| 1 || wml548 || Deprecated - to be replaced by miniconda || || ||=mnctools =|| 1 || CLEX || Now in conda - to be deleted || || ||=moose-client-wrapper =|| 4 || wml548 || Required || done || ||=mpas =|| 1 || || || || ||=mysql =|| 1 || ttl548 || Deprecated - to delete || || ||=ncas-utils =|| 1 || || || || ||=nccompress =|| 1 ||clex ||Now in Conda - deleted || || ||=nci_admin =|| 1 || wml548 || Required - managing BOM project resources || done || ||=ncimonitor =|| 1 ||clex ||Now in Conda -deleted || || ||=netcdf =|| 1 || ||Central module || || ||=netcdf-access =|| 1 || ||Central module || || ||=netcdf-fortran =|| 1 || ||Central module || || ||=netcdf-fortran-access =|| 1 || ||Central module || || ||=ninja =|| 1 || aph502 || Deprecated - to delete || || ||=nmlcompare =|| 1 || aph502 || Deleted || || ||=nmoc-utils =|| 1 || ttl548 || Required - various BoM utils || || ||=nwp_plot =|| 4 || wml548 || Required - for NWP plotting || done: problems opening grib files || ||=nwp_pytools =|| ? || wml548 || Required - for suites, model evaluation and verification || done: renamed as nwptools_py2.YYYYMM || ||=oasis3 =|| 1 || ||Requried || || ||=oasis3-mct-local =|| 9 || mrd599 || Required for ACCESS-CM2. || || ||=oasis3-mct-longrun =|| 3 || || || || ||=obstat =|| 3 || ttl548 || to be deleted || || ||=odb =|| 10 || ttl548 || Required || || ||=odbapi =|| 4 || || || || ||=odbserver =|| 0.16.2-ops-intel1903{,-debug} || mjw548 || Required for OPS. || Done || ||=openjpeg =|| 1 || ttl548 || Required || || ||=pfunit =|| 3 || || || || ||=pio =|| 2 || || || || ||=pnetcdf =|| 1 || || || || ||=pspline =|| 1 || ttl548 || Required || || ||=py_utils =|| 1 || wml548 || Required? || || ||=rmedtools =|| 1 || wml548 || Installed || done || ||=robodoc =|| 1 || wml548 || Required || done || ||=rose =|| 13 || ||Required || || ||=rttov =|| {11.3b,12.3}_ifort1903{,-debug} || mjw548 || Required for OPS/VAR || Done || ||=shumlib =|| 7 || mrd599 || Required for UM vn10.8 to 11.1 || || ||=sidl =|| 1 || saw562 || Required for high-res nesting suite || || ||=smocs =|| 2 || wml548 || Not sure || || ||=sms =|| 1 || wml548 || Deprecated - to delete || || ||=stash_utils =|| 1 || wml548 || Required? || || ||=suite_audit =|| 1 || wml548 || Required? || || ||=trui =|| 2 || wml548 || Required || done || ||=um =|| 1 || || Used by some UMUI versions, incl vn7.3 || || ||=um2netcdf-niwa =|| 1 || || || || ||=ver =|| 1 || wml548, vvk548 || Required - RMED/GMED || || ||=verify =|| 4 || ttl548 || Deprecated - to delete || || ||=verpy =|| 3 || wml548 || Required - RMED/GMED || done || ||=wrf =|| 1 || aph502 || Deleted || || ||=zlib =|| 1 || ttl548 ||Central module || || ||=pythonlib/ARCCSSive =|| 7 || ||Deprecated - Python modules to be replaced with CLEX/BoM Conda environments || || ||=pythonlib/Biggus =|| 4 || ||Deprecated - to delete || || ||=pythonlib/Cython =|| 1 || ||Deprecated - to delete || || ||=pythonlib/FoBiS.py =|| 1 || ||Deprecated - to delete || || ||=pythonlib/ImageMetaTag =|| 1 || ||Deprecated - to delete || || ||=pythonlib/Jinja2 =|| 1 || ||Deprecated - to delete || || ||=pythonlib/MarkupSafe =|| 1 || ||Deprecated - to delete || || ||=pythonlib/MySQL-python =|| 1 || ttl548 ||Deprecated - to delete || || ||=pythonlib/PIL =|| 2 || ||Deprecated - to delete || || ||=pythonlib/Pillow =|| 1 || ||Deprecated - to delete || || ||=pythonlib/PyYAML =|| 1 || ||Deprecated - to delete || || ||=pythonlib/SQLAlchemy =|| 2 || ||Deprecated - to delete || || ||=pythonlib/ScientificPython =|| 1 || ||Deprecated - to delete || || ||=pythonlib/Shapely =|| 2 || ||Deprecated - to delete || || ||=pythonlib/afterburner =|| 2 || ||Deprecated - to delete || || ||=pythonlib/ants =|| 8 || wml548 || see ~/access/apps/ants || || ||=pythonlib/backports =|| 1 || ||Deprecated - to delete || || ||=pythonlib/backports.ssl_match_hostname =|| 1 || ||Deprecated - to delete || || ||=pythonlib/basemap =|| 2 || ||Deprecated - to delete || || ||=pythonlib/brewer2mpl =|| 1 || ||Deprecated - to delete || || ||=pythonlib/bufr-metadb =|| 1 || ttl548 ||Deprecated - to delete || || ||=pythonlib/bufr-transform =|| 1 || ttl548 ||Deprecated - to delete || || ||=pythonlib/cartopy =|| 4 || ||Deprecated - to delete || || ||=pythonlib/cdat-lite =|| 4 || ||Deprecated - to delete || || ||=pythonlib/cf-units =|| 1 || ||Deprecated - to delete || || ||=pythonlib/cis =|| 1 || ||Deprecated - to delete || || ||=pythonlib/cmor =|| 2 || ||Deprecated - to delete || || ||=pythonlib/dask =|| 2 || ||Deprecated - to delete || || ||=pythonlib/dataset =|| 1 || ||Deprecated - to delete || || ||=pythonlib/decorator =|| 1 || ||Deprecated - to delete || || ||=pythonlib/docutils =|| 1 || ||Deprecated - to delete || || ||=pythonlib/drslib =|| 1 || ||Deprecated - to delete || || ||=pythonlib/enum34 =|| 1 || ||Deprecated - to delete || || ||=pythonlib/esgf-pyclient =|| 1 || ||Deprecated - to delete || || ||=pythonlib/f90nml =|| 6 || ||Deprecated - to delete || || ||=pythonlib/functools32 =|| 1 || ||Deprecated - to delete || || ||=pythonlib/gprof2dot =|| 1 || ||Deprecated - to delete || || ||=pythonlib/h5netcdf =|| 1 || ||Deprecated - to delete || || ||=pythonlib/h5py =|| 1 || wml548 || In nwptools_py2.201911 || done || ||=pythonlib/ipython =|| 2 || ||Deprecated - to delete || || ||=pythonlib/iris =|| 6 || ||Deprecated - to delete || || ||=pythonlib/iris_grib =|| 1 || ||Deprecated - to delete || || ||=pythonlib/jsonschema =|| 1 || ||Deprecated - to delete || || ||=pythonlib/llvmlite =|| 1 || ||Deprecated - to delete || || ||=pythonlib/lxml =|| 1 || ||Deprecated - to delete || || ||=pythonlib/mask_tools =|| 1 || ||Deprecated - to delete || || ||=pythonlib/matplotlib =|| 1 || ||Deprecated - to delete || || ||=pythonlib/maybe =|| 1 || ||Deprecated - to delete || || ||=pythonlib/mock =|| 1 || ||Deprecated - to delete || || ||=pythonlib/mule =|| 7 || ||Deprecated - to delete || || ||=pythonlib/netCDF4 =|| 1 || ||Deprecated - to delete || || ||=pythonlib/nose =|| 1 || ||Deprecated - to delete || || ||=pythonlib/numba =|| 1 || ||Deprecated - to delete || || ||=pythonlib/numexpr =|| 1 || ||Deprecated - to delete || || ||=pythonlib/numpy =|| 2 || ||Deprecated - to delete || || ||=pythonlib/pandas =|| 3 || ||Deprecated - to delete || || ||=pythonlib/payu =|| 1 || ||Deprecated - to delete || || ||=pythonlib/pep8 =|| 1 || ||Deprecated - to delete || || ||=pythonlib/pip =|| 2 || ||Deprecated - to delete || || ||=pythonlib/pp =|| 1 || ||Deprecated - to delete || || ||=pythonlib/previous =|| 2 || ||Deprecated - to delete || || ||=pythonlib/psutil =|| 1 || ||Deprecated - to delete || || ||=pythonlib/pybufr_ecmwf =|| 1 || wml548, ttl548 || In nwptools_py2.201911 || done || ||=pythonlib/pygrib =|| 1 || ||Deprecated - to delete || || ||=pythonlib/pyhdf =|| 1 || ||Deprecated - to delete || || ||=pythonlib/pyke =|| 1 || ||Deprecated - to delete || || ||=pythonlib/pyshp =|| 1 || ||Deprecated - to delete || || ||=pythonlib/pyspharm =|| 1 || ||Deprecated - to delete || || ||=pythonlib/pytest =|| 2 || ||Deprecated - to delete || || ||=pythonlib/python-bufr =|| 1 || wml548 || required || done || ||=pythonlib/python-common-v2 =|| 1 || ||Deprecated - to delete || || ||=pythonlib/python2-prereqs =|| 1 || ||Deprecated - to delete || || ||=pythonlib/pytz =|| 2 || ||Deprecated - to delete || || ||=pythonlib/pyzmq =|| 1 || ||Deprecated - to delete || || ||=pythonlib/rpy2 =|| 2 || ||Deprecated - to delete || || ||=pythonlib/seaborn =|| 1 || ||Deprecated - to delete || || ||=pythonlib/sh =|| 1 || ||Deprecated - to delete || || ||=pythonlib/singledispatch =|| 1 || ||Deprecated - to delete || || ||=pythonlib/six =|| 2 || ||Deprecated - to delete || || ||=pythonlib/statsmodels =|| 1 || ||Deprecated - to delete || || ||=pythonlib/tables =|| 1 || ||Deprecated - to delete || || ||=pythonlib/toolz =|| 2 || ||Deprecated - to delete || || ||=pythonlib/tornado =|| 1 || ||Deprecated - to delete || || ||=pythonlib/umfile_utils =|| 3 || mrd599 || required|| || ||=pythonlib/verpy =|| 1 || ||Deprecated - to delete || || ||=pythonlib/virtualtime =|| 1 || ||Deprecated - to delete || || ||=pythonlib/windspharm =|| 1 || ||Deprecated - to delete || || ||=pythonlib/xarray =|| 2 || ||Deprecated - to delete || || ||=pythonlib/xray =|| 2 || ||Deprecated - to delete || || List of applications in ~access/apps without module in ../modules ||= '''Apps Name''' =||= '''Versions''' =||= '''Owner''' =||= '''!Action/Notes''' =||= '''Status''' =|| ||=cram =|| || || || || ||=gapi199 =|| 1.9.9 || ttl548 || Deprecated - to delete || || ||=jasper =|| 1.9 || ttl548 || Deprecated - to delete || || ||=modules-common-v2.0.tcl =|| || || || || ||=pcmdi_metrics =|| || || || || ||=xconv =|| || saw562 || Installed as a module || done || ||=xancil =|| || saw562 || Installed as a module || done || ||=xxdiff =|| || wml548 || Installed as a module || done || ||=zenity =|| ||wml548 || Deprecated - to delete || ||