Console Output

Started by user Claire Carouge
Checking out git https://github.com/coecms/wrf-testing into /cloudvolume/jenkins/WRF/WRF-Core/workspace@script/4d229135b6a55de79784005e3513781ebc4985320911f69c483ba50e9b605e9f to read WRF-Core.groovy
The recommended git tool is: NONE
No credentials specified
 > /usr/bin/git rev-parse --resolve-git-dir /cloudvolume/jenkins/WRF/WRF-Core/workspace@script/4d229135b6a55de79784005e3513781ebc4985320911f69c483ba50e9b605e9f/.git # timeout=10
Fetching changes from the remote Git repository
 > /usr/bin/git config remote.origin.url https://github.com/coecms/wrf-testing # timeout=10
Fetching upstream changes from https://github.com/coecms/wrf-testing
 > /usr/bin/git --version # timeout=10
 > git --version # 'git version 1.8.3.1'
 > /usr/bin/git fetch --tags --progress https://github.com/coecms/wrf-testing +refs/heads/*:refs/remotes/origin/* # timeout=10
 > /usr/bin/git rev-parse refs/remotes/origin/4.4^{commit} # timeout=10
Checking out Revision a002ce33af54d964d5189f6a160a2ce1df4da977 (refs/remotes/origin/4.4)
 > /usr/bin/git config core.sparsecheckout # timeout=10
 > /usr/bin/git checkout -f a002ce33af54d964d5189f6a160a2ce1df4da977 # timeout=10
Commit message: "Fix submodules init"
 > /usr/bin/git rev-list --no-walk a002ce33af54d964d5189f6a160a2ce1df4da977 # timeout=10
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
‘ccc561.gadi’ is offline
Running on ccc561.gadi in /home/561/ccc561/scratch/jenkins/workspace/WRF/WRF-Core
[Pipeline] {
[Pipeline] stage
Using the ‘stage’ step without a block argument is deprecated
Entering stage extract
Proceeding
[Pipeline] sh
+ rm -rf tests
[Pipeline] git
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
 > /usr/bin/git rev-parse --resolve-git-dir /home/561/ccc561/scratch/jenkins/workspace/WRF/WRF-Core/.git # timeout=10
 > /usr/bin/git config remote.origin.url https://github.com/coecms/WRF.git # timeout=10
Fetching upstream changes from https://github.com/coecms/WRF.git
 > /usr/bin/git --version # timeout=10
 > git --version # 'git version 2.27.0'
 > /usr/bin/git fetch --tags --force --progress -- https://github.com/coecms/WRF.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 58bebf02fc3822428df8f7378b6aeebff66e767c (refs/remotes/origin/V4.4)
 > /usr/bin/git rev-parse refs/remotes/origin/V4.4^{commit} # timeout=10
 > /usr/bin/git config core.sparsecheckout # timeout=10
 > /usr/bin/git checkout -f 58bebf02fc3822428df8f7378b6aeebff66e767c # timeout=10
 > /usr/bin/git branch -a -v --no-abbrev # timeout=10
 > /usr/bin/git branch -D V4.4 # timeout=10
 > /usr/bin/git checkout -b V4.4 58bebf02fc3822428df8f7378b6aeebff66e767c # timeout=10
Commit message: "More resources needed for compilation"
[Pipeline] sh
+ git clone https://github.com/coecms/wrf-testing.git tests
Cloning into 'tests'...
[Pipeline] dir
Running in /home/561/ccc561/scratch/jenkins/workspace/WRF/WRF-Core/tests
[Pipeline] {
[Pipeline] sh
+ git branch --track 4.4 origin/4.4
Branch '4.4' set up to track remote branch '4.4' from 'origin'.
[Pipeline] sh
+ git checkout 4.4
Switched to branch '4.4'
Your branch is up to date with 'origin/4.4'.
[Pipeline] }
[Pipeline] // dir
[Pipeline] pwd
[Pipeline] stage
Using the ‘stage’ step without a block argument is deprecated
Entering stage clean_WRF
Proceeding
[Pipeline] dir
Running in /home/561/ccc561/scratch/jenkins/workspace/WRF/WRF-Core/WRF
[Pipeline] {
[Pipeline] sh
+ ./clean -a
[Pipeline] }
[Pipeline] // dir
[Pipeline] stage
Using the ‘stage’ step without a block argument is deprecated
Entering stage clean_WPS
Proceeding
[Pipeline] dir
Running in /home/561/ccc561/scratch/jenkins/workspace/WRF/WRF-Core/WPS
[Pipeline] {
[Pipeline] sh
+ ./clean -a
if [ -e geogrid.exe ] ; then \
	/bin/rm -f geogrid.exe ; \
fi
if [ -e ../geogrid.exe ] ; then \
	/bin/rm -f ../geogrid.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/geogrid/src'
/bin/rm -f cio.o wrf_debug.o bitarray_module.o constants_module.o module_stringutil.o geogrid.o gridinfo_module.o hash_module.o interp_module.o list_module.o llxy_module.o misc_definitions_module.o module_debug.o module_map_utils.o output_module.o parallel_module.o process_tile_module.o proc_point_module.o queue_module.o read_geogrid.o smooth_module.o source_data_module.o *.f90 *.mod
/bin/rm -f geogrid.exe 
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/geogrid/src'
( cd src/ngl ; make -i -r DEV_TOP="/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS" clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl'
/bin/rm -f *.a
( cd w3 ; make -i -r DEV_TOP="/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS" clean )
make[2]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl/w3'
Makefile:44: warning: overriding recipe for target '.f.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:103: warning: ignoring old recipe for target '.f.o'
Makefile:48: warning: overriding recipe for target '.c.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:99: warning: ignoring old recipe for target '.c.o'
/bin/rm -f bacio_module.o getgb.o     getgbmh.o   putgbex.o   w3fi73.o getgb1r.o   getgbmp.o   putgbn.o    w3fi74.o getgb1re.o  getgbp.o    r63w72.o    w3fi75.o getgb1s.o   getgi.o     sbyte.o     w3fi76.o getgbe.o    getgir.o    sbytes.o    w3fi82.o getgbeh.o   idsdef.o                w3fi83.o getgbem.o   iw3jdn.o    w3difdat.o  w3fs26.o getgbemh.o  ixgb.o      w3doxdat.o  w3log.o getgbemp.o  lengds.o    w3fi01.o    w3movdat.o getgbens.o  pdsens.o    w3fi58.o    w3reddat.o getgbep.o   pdseup.o    w3fi59.o    w3tagb.o errmsg.o    getgbex.o   putgb.o     w3fi63.o gbytes.o    getgbexm.o  putgbe.o    w3fi68.o gbytes_char.o           getgbh.o    putgben.o getbit.o    getgbm.o    putgbens.o  w3fi72.o fparsei.o   fparser.o   instrument.o start.o     summary.o   w3utcdat.o  w3fs21.o w3locdat.o  w3fi71.o    baciof.o bacio.v1.3.o errexit.o *.mod *.a
make[2]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl/w3'
( cd g2 ; make -i -r DEV_TOP="/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS" clean )
make[2]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl/g2'
Makefile:67: warning: overriding recipe for target '.F.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:107: warning: ignoring old recipe for target '.F.o'
Makefile:72: warning: overriding recipe for target '.f.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:103: warning: ignoring old recipe for target '.f.o'
Makefile:75: warning: overriding recipe for target '.c.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:99: warning: ignoring old recipe for target '.c.o'
/bin/rm -f gridtemplates.o pdstemplates.o drstemplates.o gribmod.o realloc.o intmath.o addfield.o addgrid.o addlocal.o getfield.o gb_info.o gf_getfld.o gf_free.o gf_unpack1.o gf_unpack2.o gf_unpack3.o gf_unpack4.o gf_unpack5.o gf_unpack6.o gf_unpack7.o gettemplates.o getlocal.o getdim.o getpoly.o gribcreate.o gribend.o gribinfo.o mkieee.o rdieee.o simunpack.o reduce.o comunpack.o specunpack.o jpcunpack.o dec_jpeg2000.o pngunpack.o dec_png.o gbytesc.o skgb.o ixgb2.o getidx.o getg2i.o getg2ir.o getgb2s.o getgb2r.o getgb2l.o getgb2.o getgb2p.o getgb2rp.o putgb2.o g2grids.o gdt2gds.o params.o params_ecmwf.o mova2i.o
/bin/rm -f *.a *.M *.mod
make[2]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl/g2'
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl'
if [ -h ungrib.exe ] ; then \
	/bin/rm -f ungrib.exe ; \
fi
if [ -h ../ungrib.exe ] ; then \
	/bin/rm -f ../ungrib.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src'
Makefile:90: warning: overriding recipe for target '.F.o'
../../configure.wps:107: warning: ignoring old recipe for target '.F.o'
Makefile:95: warning: overriding recipe for target '.c.o'
../../configure.wps:99: warning: ignoring old recipe for target '.c.o'
/bin/rm -f *.o *.i *.f90 *.mod *.M libpgu.a *exe
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src'
if [ -e metgrid.exe ] ; then \
	/bin/rm -f metgrid.exe ; \
fi
if [ -e ../metgrid.exe ] ; then \
	/bin/rm -f ../metgrid.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/metgrid/src'
/bin/rm -f cio.o wrf_debug.o bitarray_module.o constants_module.o datatype_module.o module_stringutil.o gridinfo_module.o metgrid.o input_module.o interp_module.o interp_option_module.o list_module.o llxy_module.o met_data_module.o minheap_module.o misc_definitions_module.o module_date_pack.o module_debug.o module_map_utils.o module_mergesort.o output_module.o parallel_module.o process_domain_module.o queue_module.o read_met_module.o rotate_winds_module.o storage_module.o write_met_module.o scan_input.o mpas_mesh.o target_mesh.o remapper.o *.f90 *.mod
/bin/rm -f metgrid.exe
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/metgrid/src'
( cd src/ngl ; make -i -r DEV_TOP="/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS" clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl'
/bin/rm -f *.a
( cd w3 ; make -i -r DEV_TOP="/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS" clean )
make[2]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl/w3'
Makefile:44: warning: overriding recipe for target '.f.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:103: warning: ignoring old recipe for target '.f.o'
Makefile:48: warning: overriding recipe for target '.c.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:99: warning: ignoring old recipe for target '.c.o'
/bin/rm -f bacio_module.o getgb.o     getgbmh.o   putgbex.o   w3fi73.o getgb1r.o   getgbmp.o   putgbn.o    w3fi74.o getgb1re.o  getgbp.o    r63w72.o    w3fi75.o getgb1s.o   getgi.o     sbyte.o     w3fi76.o getgbe.o    getgir.o    sbytes.o    w3fi82.o getgbeh.o   idsdef.o                w3fi83.o getgbem.o   iw3jdn.o    w3difdat.o  w3fs26.o getgbemh.o  ixgb.o      w3doxdat.o  w3log.o getgbemp.o  lengds.o    w3fi01.o    w3movdat.o getgbens.o  pdsens.o    w3fi58.o    w3reddat.o getgbep.o   pdseup.o    w3fi59.o    w3tagb.o errmsg.o    getgbex.o   putgb.o     w3fi63.o gbytes.o    getgbexm.o  putgbe.o    w3fi68.o gbytes_char.o           getgbh.o    putgben.o getbit.o    getgbm.o    putgbens.o  w3fi72.o fparsei.o   fparser.o   instrument.o start.o     summary.o   w3utcdat.o  w3fs21.o w3locdat.o  w3fi71.o    baciof.o bacio.v1.3.o errexit.o *.mod *.a
make[2]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl/w3'
( cd g2 ; make -i -r DEV_TOP="/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS" clean )
make[2]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl/g2'
Makefile:67: warning: overriding recipe for target '.F.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:107: warning: ignoring old recipe for target '.F.o'
Makefile:72: warning: overriding recipe for target '.f.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:103: warning: ignoring old recipe for target '.f.o'
Makefile:75: warning: overriding recipe for target '.c.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:99: warning: ignoring old recipe for target '.c.o'
/bin/rm -f gridtemplates.o pdstemplates.o drstemplates.o gribmod.o realloc.o intmath.o addfield.o addgrid.o addlocal.o getfield.o gb_info.o gf_getfld.o gf_free.o gf_unpack1.o gf_unpack2.o gf_unpack3.o gf_unpack4.o gf_unpack5.o gf_unpack6.o gf_unpack7.o gettemplates.o getlocal.o getdim.o getpoly.o gribcreate.o gribend.o gribinfo.o mkieee.o rdieee.o simunpack.o reduce.o comunpack.o specunpack.o jpcunpack.o dec_jpeg2000.o pngunpack.o dec_png.o gbytesc.o skgb.o ixgb2.o getidx.o getg2i.o getg2ir.o getgb2s.o getgb2r.o getgb2l.o getgb2.o getgb2p.o getgb2rp.o putgb2.o g2grids.o gdt2gds.o params.o params_ecmwf.o mova2i.o
/bin/rm -f *.a *.M *.mod
make[2]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl/g2'
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl'
if [ -h g1print.exe ] ; then \
	/bin/rm -f g1print.exe ; \
fi
if [ -h ../g1print.exe ] ; then \
	/bin/rm -f ../g1print.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src'
Makefile:90: warning: overriding recipe for target '.F.o'
../../configure.wps:107: warning: ignoring old recipe for target '.F.o'
Makefile:95: warning: overriding recipe for target '.c.o'
../../configure.wps:99: warning: ignoring old recipe for target '.c.o'
/bin/rm -f *.o *.i *.f90 *.mod *.M libpgu.a *exe
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src'
( cd src/ngl ; make -i -r DEV_TOP="/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS" clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl'
/bin/rm -f *.a
( cd w3 ; make -i -r DEV_TOP="/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS" clean )
make[2]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl/w3'
Makefile:44: warning: overriding recipe for target '.f.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:103: warning: ignoring old recipe for target '.f.o'
Makefile:48: warning: overriding recipe for target '.c.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:99: warning: ignoring old recipe for target '.c.o'
/bin/rm -f bacio_module.o getgb.o     getgbmh.o   putgbex.o   w3fi73.o getgb1r.o   getgbmp.o   putgbn.o    w3fi74.o getgb1re.o  getgbp.o    r63w72.o    w3fi75.o getgb1s.o   getgi.o     sbyte.o     w3fi76.o getgbe.o    getgir.o    sbytes.o    w3fi82.o getgbeh.o   idsdef.o                w3fi83.o getgbem.o   iw3jdn.o    w3difdat.o  w3fs26.o getgbemh.o  ixgb.o      w3doxdat.o  w3log.o getgbemp.o  lengds.o    w3fi01.o    w3movdat.o getgbens.o  pdsens.o    w3fi58.o    w3reddat.o getgbep.o   pdseup.o    w3fi59.o    w3tagb.o errmsg.o    getgbex.o   putgb.o     w3fi63.o gbytes.o    getgbexm.o  putgbe.o    w3fi68.o gbytes_char.o           getgbh.o    putgben.o getbit.o    getgbm.o    putgbens.o  w3fi72.o fparsei.o   fparser.o   instrument.o start.o     summary.o   w3utcdat.o  w3fs21.o w3locdat.o  w3fi71.o    baciof.o bacio.v1.3.o errexit.o *.mod *.a
make[2]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl/w3'
( cd g2 ; make -i -r DEV_TOP="/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS" clean )
make[2]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl/g2'
Makefile:67: warning: overriding recipe for target '.F.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:107: warning: ignoring old recipe for target '.F.o'
Makefile:72: warning: overriding recipe for target '.f.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:103: warning: ignoring old recipe for target '.f.o'
Makefile:75: warning: overriding recipe for target '.c.o'
/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/configure.wps:99: warning: ignoring old recipe for target '.c.o'
/bin/rm -f gridtemplates.o pdstemplates.o drstemplates.o gribmod.o realloc.o intmath.o addfield.o addgrid.o addlocal.o getfield.o gb_info.o gf_getfld.o gf_free.o gf_unpack1.o gf_unpack2.o gf_unpack3.o gf_unpack4.o gf_unpack5.o gf_unpack6.o gf_unpack7.o gettemplates.o getlocal.o getdim.o getpoly.o gribcreate.o gribend.o gribinfo.o mkieee.o rdieee.o simunpack.o reduce.o comunpack.o specunpack.o jpcunpack.o dec_jpeg2000.o pngunpack.o dec_png.o gbytesc.o skgb.o ixgb2.o getidx.o getg2i.o getg2ir.o getgb2s.o getgb2r.o getgb2l.o getgb2.o getgb2p.o getgb2rp.o putgb2.o g2grids.o gdt2gds.o params.o params_ecmwf.o mova2i.o
/bin/rm -f *.a *.M *.mod
make[2]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl/g2'
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src/ngl'
if [ -h g2print.exe ] ; then \
	/bin/rm -f g2print.exe ; \
fi
if [ -h ../g2print.exe ] ; then \
	/bin/rm -f ../g2print.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src'
Makefile:90: warning: overriding recipe for target '.F.o'
../../configure.wps:107: warning: ignoring old recipe for target '.F.o'
Makefile:95: warning: overriding recipe for target '.c.o'
../../configure.wps:99: warning: ignoring old recipe for target '.c.o'
/bin/rm -f *.o *.i *.f90 *.mod *.M libpgu.a *exe
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/ungrib/src'
if [ -h plotfmt.exe ] ; then \
	/bin/rm -f plotfmt.exe ; \
fi
if [ -h ../plotfmt.exe ] ; then \
	/bin/rm -f ../plotfmt.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
/bin/rm -f plotgrids.o avg_tsfc.o calc_ecmwf_p.o elev_angle.o plotfmt.o rd_intermediate.o int2nc.o mod_levs.o height_ukmo.o cio.o gridinfo_module.o misc_definitions_module.o module_debug.o module_stringutil.o read_met_module.o write_met_module.o module_date_pack.o met_data_module.o constants_module.o module_map_utils.o *.f90 *.mod
/bin/rm -f plotgrids.exe plotfmt.exe avg_tsfc.exe elev_angle.exe calc_ecmwf_p.exe rd_intermediate.exe \
mod_levs.exe height_ukmo.exe int2nc.exe
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
if [ -h plotgrids.exe ] ; then \
	/bin/rm -f plotgrids.exe ; \
fi
if [ -h ../plotgrids.exe ] ; then \
	/bin/rm -f ../plotgrids.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
/bin/rm -f plotgrids.o avg_tsfc.o calc_ecmwf_p.o elev_angle.o plotfmt.o rd_intermediate.o int2nc.o mod_levs.o height_ukmo.o cio.o gridinfo_module.o misc_definitions_module.o module_debug.o module_stringutil.o read_met_module.o write_met_module.o module_date_pack.o met_data_module.o constants_module.o module_map_utils.o *.f90 *.mod
/bin/rm -f plotgrids.exe plotfmt.exe avg_tsfc.exe elev_angle.exe calc_ecmwf_p.exe rd_intermediate.exe \
mod_levs.exe height_ukmo.exe int2nc.exe
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
if [ -h mod_levs.exe ] ; then \
	/bin/rm -f mod_levs.exe ; \
fi
if [ -h ../mod_levs.exe ] ; then \
	/bin/rm -f ../mod_levs.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
/bin/rm -f plotgrids.o avg_tsfc.o calc_ecmwf_p.o elev_angle.o plotfmt.o rd_intermediate.o int2nc.o mod_levs.o height_ukmo.o cio.o gridinfo_module.o misc_definitions_module.o module_debug.o module_stringutil.o read_met_module.o write_met_module.o module_date_pack.o met_data_module.o constants_module.o module_map_utils.o *.f90 *.mod
/bin/rm -f plotgrids.exe plotfmt.exe avg_tsfc.exe elev_angle.exe calc_ecmwf_p.exe rd_intermediate.exe \
mod_levs.exe height_ukmo.exe int2nc.exe
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
if [ -h rd_intermediate.exe ] ; then \
	/bin/rm -f rd_intermediate.exe ; \
fi
if [ -h ../rd_intermediate.exe ] ; then \
	/bin/rm -f ../rd_intermediate.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
/bin/rm -f plotgrids.o avg_tsfc.o calc_ecmwf_p.o elev_angle.o plotfmt.o rd_intermediate.o int2nc.o mod_levs.o height_ukmo.o cio.o gridinfo_module.o misc_definitions_module.o module_debug.o module_stringutil.o read_met_module.o write_met_module.o module_date_pack.o met_data_module.o constants_module.o module_map_utils.o *.f90 *.mod
/bin/rm -f plotgrids.exe plotfmt.exe avg_tsfc.exe elev_angle.exe calc_ecmwf_p.exe rd_intermediate.exe \
mod_levs.exe height_ukmo.exe int2nc.exe
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
if [ -h avg_tsfc.exe ] ; then \
	/bin/rm -f avg_tsfc.exe ; \
fi
if [ -h ../avg_tsfc.exe ] ; then \
	/bin/rm -f ../avg_tsfc.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
/bin/rm -f plotgrids.o avg_tsfc.o calc_ecmwf_p.o elev_angle.o plotfmt.o rd_intermediate.o int2nc.o mod_levs.o height_ukmo.o cio.o gridinfo_module.o misc_definitions_module.o module_debug.o module_stringutil.o read_met_module.o write_met_module.o module_date_pack.o met_data_module.o constants_module.o module_map_utils.o *.f90 *.mod
/bin/rm -f plotgrids.exe plotfmt.exe avg_tsfc.exe elev_angle.exe calc_ecmwf_p.exe rd_intermediate.exe \
mod_levs.exe height_ukmo.exe int2nc.exe
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
if [ -h calc_ecmwf_p.exe ] ; then \
	/bin/rm -f calc_ecmwf_p.exe ; \
fi
if [ -h ../calc_ecmwf_p.exe ] ; then \
	/bin/rm -f ../calc_ecmwf_p.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
/bin/rm -f plotgrids.o avg_tsfc.o calc_ecmwf_p.o elev_angle.o plotfmt.o rd_intermediate.o int2nc.o mod_levs.o height_ukmo.o cio.o gridinfo_module.o misc_definitions_module.o module_debug.o module_stringutil.o read_met_module.o write_met_module.o module_date_pack.o met_data_module.o constants_module.o module_map_utils.o *.f90 *.mod
/bin/rm -f plotgrids.exe plotfmt.exe avg_tsfc.exe elev_angle.exe calc_ecmwf_p.exe rd_intermediate.exe \
mod_levs.exe height_ukmo.exe int2nc.exe
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
if [ -h height_ukmo.exe ] ; then \
	/bin/rm -f height_ukmo.exe ; \
fi
if [ -h ../height_ukmo.exe ] ; then \
	/bin/rm -f ../height_ukmo.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
/bin/rm -f plotgrids.o avg_tsfc.o calc_ecmwf_p.o elev_angle.o plotfmt.o rd_intermediate.o int2nc.o mod_levs.o height_ukmo.o cio.o gridinfo_module.o misc_definitions_module.o module_debug.o module_stringutil.o read_met_module.o write_met_module.o module_date_pack.o met_data_module.o constants_module.o module_map_utils.o *.f90 *.mod
/bin/rm -f plotgrids.exe plotfmt.exe avg_tsfc.exe elev_angle.exe calc_ecmwf_p.exe rd_intermediate.exe \
mod_levs.exe height_ukmo.exe int2nc.exe
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
if [ -h int2nc.exe ] ; then \
	/bin/rm -f int2nc.exe ; \
fi
if [ -h ../int2nc.exe ] ; then \
	/bin/rm -f ../int2nc.exe ; \
fi
( cd src ; make -i -r clean )
make[1]: Entering directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
/bin/rm -f plotgrids.o avg_tsfc.o calc_ecmwf_p.o elev_angle.o plotfmt.o rd_intermediate.o int2nc.o mod_levs.o height_ukmo.o cio.o gridinfo_module.o misc_definitions_module.o module_debug.o module_stringutil.o read_met_module.o write_met_module.o module_date_pack.o met_data_module.o constants_module.o module_map_utils.o *.f90 *.mod
/bin/rm -f plotgrids.exe plotfmt.exe avg_tsfc.exe elev_angle.exe calc_ecmwf_p.exe rd_intermediate.exe \
mod_levs.exe height_ukmo.exe int2nc.exe
make[1]: Leaving directory '/scratch/w97/ccc561/jenkins/workspace/WRF/WRF-Core/WPS/util/src'
[Pipeline] }
[Pipeline] // dir
[Pipeline] stage
Using the ‘stage’ step without a block argument is deprecated
Entering stage compile_WRF
Proceeding
[Pipeline] dir
Running in /home/561/ccc561/scratch/jenkins/workspace/WRF/WRF-Core/WRF
[Pipeline] {
[Pipeline] sh
+ git submodule update --init --recursive
[Pipeline] sh
+ ./run_compile -t
checking for perl5... no
checking for perl... found /bin/perl (perl)
Will use NETCDF in dir: /apps/netcdf/4.7.1
NETCDF_classic:  
HDF5 not set in environment. Will configure WRF for use without.
PHDF5 not set in environment. Will configure WRF for use without.
Will use 'time' to report timing information


If you REALLY want Grib2 output from WRF, modify the arch/Config.pl script.
Right now you are not getting the Jasper lib, from the environment, compiled into WRF.

------------------------------------------------------------------------
Please select from among the following Linux x86_64 options:

  1. (serial)   2. (smpar)   3. (dmpar)   4. (dm+sm)   PGI (pgf90/gcc)
  5. (serial)   6. (smpar)   7. (dmpar)   8. (dm+sm)   PGI (pgf90/pgcc): SGI MPT
  9. (serial)  10. (smpar)  11. (dmpar)  12. (dm+sm)   PGI (pgf90/gcc): PGI accelerator
 13. (serial)  14. (smpar)  15. (dmpar)  16. (dm+sm)   INTEL (ifort/icc)
                                         17. (dm+sm)   INTEL (ifort/icc): Xeon Phi (MIC architecture)
 18. (serial)  19. (smpar)  20. (dmpar)  21. (dm+sm)   INTEL (ifort/icc): Xeon (SNB with AVX mods)
 22. (serial)  23. (smpar)  24. (dmpar)  25. (dm+sm)   INTEL (ifort/icc): SGI MPT
 26. (serial)  27. (smpar)  28. (dmpar)  29. (dm+sm)   INTEL (ifort/icc): IBM POE
 30. (serial)               31. (dmpar)                PATHSCALE (pathf90/pathcc)
 32. (serial)  33. (smpar)  34. (dmpar)  35. (dm+sm)   GNU (gfortran/gcc)
 36. (serial)  37. (smpar)  38. (dmpar)  39. (dm+sm)   IBM (xlf90_r/cc_r)
 40. (serial)  41. (smpar)  42. (dmpar)  43. (dm+sm)   PGI (ftn/gcc): Cray XC CLE
 44. (serial)  45. (smpar)  46. (dmpar)  47. (dm+sm)   CRAY CCE (ftn $(NOOMP)/cc): Cray XE and XC
 48. (serial)  49. (smpar)  50. (dmpar)  51. (dm+sm)   INTEL (ftn/icc): Cray XC
 52. (serial)  53. (smpar)  54. (dmpar)  55. (dm+sm)   PGI (pgf90/pgcc)
 56. (serial)  57. (smpar)  58. (dmpar)  59. (dm+sm)   PGI (pgf90/gcc): -f90=pgf90
 60. (serial)  61. (smpar)  62. (dmpar)  63. (dm+sm)   PGI (pgf90/pgcc): -f90=pgf90
 64. (serial)  65. (smpar)  66. (dmpar)  67. (dm+sm)   INTEL (ifort/icc): HSW/BDW
 68. (serial)  69. (smpar)  70. (dmpar)  71. (dm+sm)   INTEL (ifort/icc): KNL MIC
 72. (serial)  73. (smpar)  74. (dmpar)  75. (dm+sm)   INTEL (ifort/icc): CL/SL
 76. (serial)  77. (smpar)  78. (dmpar)  79. (dm+sm)   INTEL (ifort/icc): CL/SL less opt
 80. (serial)  81. (smpar)  82. (dmpar)  83. (dm+sm)   FUJITSU (frtpx/fccpx): FX10/FX100 SPARC64 IXfx/Xlfx

Enter selection [1-83] : ------------------------------------------------------------------------
Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 1]: 
Configuration successful! 
------------------------------------------------------------------------
testing for fseeko and fseeko64
fseeko64 is supported
------------------------------------------------------------------------

# Settings for    Linux CL/SLcons x86_64 ppc64le i486 i586 i686  (dm+sm)
#
DESCRIPTION     =       INTEL ($SFC/$SCC): CL/SL less opt
DMPARALLEL      =        1
OMPCPP          =        -D_OPENMP
OMP             =        -qopenmp -fpp -auto
OMPCC           =        -qopenmp -fpp -auto
SFC             =       ifort
SCC             =       icc
CCOMP           =       icc
DM_FC           =       mpif90 -f90=$(SFC)
DM_CC           =       mpicc -cc=$(SCC)
FC              =       time $(DM_FC)
CC              =       $(DM_CC) -DFSEEKO64_OK 
LD              =       $(FC)
RWORDSIZE       =       $(NATIVE_RWORDSIZE)
PROMOTION       =       -real-size `expr 8 \* $(RWORDSIZE)` -i4
ARCH_LOCAL      =       -DNONSTANDARD_SYSTEM_FUNC -DWRF_USE_CLM $(NETCDF4_IO_OPTS)
CFLAGS_LOCAL    =       -w -O2 -ip -xHost -fp-model fast=2 -no-prec-div -no-prec-sqrt -ftz -no-multibyte-chars
LDFLAGS_LOCAL   =       -ip -xHost -fp-model fast=2 -no-prec-div -no-prec-sqrt -ftz -align all -fno-alias -fno-common
CPLUSPLUSLIB    =       
ESMF_LDFLAG     =       $(CPLUSPLUSLIB)
FCOPTIM         =       -O2
FCREDUCEDOPT	=       $(FCOPTIM)
FCNOOPT		=       -O0 -fno-inline -no-ip
FCDEBUG         =       # -g $(FCNOOPT) -traceback # -fpe0 -check noarg_temp_created,bounds,format,output_conversion,pointers,uninit -ftrapuv -unroll0 -u
FORMAT_FIXED    =       -FI
FORMAT_FREE     =       -FR
FCSUFFIX        =
BYTESWAPIO      =       -convert big_endian
RECORDLENGTH    =       -assume byterecl
FCBASEOPTS_NO_G =       -ip -fp-model precise -w -ftz -align all -fno-alias $(FORMAT_FREE) $(BYTESWAPIO) -xHost -fp-model fast=2 -no-heap-arrays -no-prec-div -no-prec-sqrt -fno-common -xCORE-AVX512
FCBASEOPTS      =       $(FCBASEOPTS_NO_G) $(FCDEBUG)
MODULE_SRCH_FLAG =     
TRADFLAG        =      -traditional-cpp $(NETCDF4_IO_OPTS)
CPP             =      /lib/cpp -P -nostdinc
AR              =      ar
ARFLAGS         =      ru
M4              =      m4
RANLIB          =      ranlib
RLFLAGS		=	
CC_TOOLS        =      $(SCC) 

###########################################################
######################
# POSTAMBLE

FGREP = fgrep -iq

ARCHFLAGS       =    $(COREDEFS) -DIWORDSIZE=$(IWORDSIZE) -DDWORDSIZE=$(DWORDSIZE) -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=$(LWORDSIZE) \
                     $(ARCH_LOCAL) \
                     $(DA_ARCHFLAGS) \
                      -DDM_PARALLEL \
                       \
                      -DNETCDF \
                       \
                       \
                       \
                       \
                       \
                       \
                       \
                       \
                       \
                       -DLANDREAD_STUB=1 \
                       \
                       \
                      -DUSE_ALLOCATABLES \
                      -Dwrfmodel \
                      -DGRIB1 \
                      -DINTIO \
                      -DKEEP_INT_AROUND \
                      -DLIMIT_ARGS \
                      -DBUILD_RRTMG_FAST=0 \
                      -DBUILD_RRTMK=0 \
                      -DBUILD_SBM_FAST=1 \
                      -DSHOW_ALL_VARS_USED=0 \
                      -DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
                      -DMAX_DOMAINS_F=$(MAX_DOMAINS) \
                      -DMAX_HISTORY=$(MAX_HISTORY) \
		      -DNMM_NEST=$(WRF_NMM_NEST)
CFLAGS          =    $(CFLAGS_LOCAL) -DDM_PARALLEL  \
                      -DLANDREAD_STUB=1 \
                      -DMAX_HISTORY=$(MAX_HISTORY) -DNMM_CORE=$(WRF_NMM_CORE)
FCFLAGS         =    $(FCOPTIM) $(FCBASEOPTS)
ESMF_LIB_FLAGS  =    
# ESMF 5 -- these are defined in esmf.mk, included above
 ESMF_IO_LIB     =    -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
ESMF_IO_LIB_EXT =    -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
INCLUDE_MODULES =    $(MODULE_SRCH_FLAG) \
                     $(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
                      -I$(WRF_SRC_ROOT_DIR)/main \
                      -I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
                      -I$(WRF_SRC_ROOT_DIR)/external/io_int \
                      -I$(WRF_SRC_ROOT_DIR)/frame \
                      -I$(WRF_SRC_ROOT_DIR)/share \
                      -I$(WRF_SRC_ROOT_DIR)/phys \
                      -I$(WRF_SRC_ROOT_DIR)/wrftladj \
                      -I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
                      -I$(NETCDFPATH)/include/Intel \
                       
REGISTRY        =    Registry
CC_TOOLS_CFLAGS = -DNMM_CORE=$(WRF_NMM_CORE)

LIB             =    $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL) $(LIB_WRF_HYDRO)  $(NETCDF4_DEP_LIB)
LDFLAGS         =    $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL) 
ENVCOMPDEFS     =    
WRF_CHEM	=	0 
CPPFLAGS        =    $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG) 
NETCDFPATH      =    /apps/netcdf/4.7.1
HDF5PATH        =    
WRFPLUSPATH     =    
RTTOVPATH       =    
PNETCDFPATH     =    

bundled:  io_only 
external: io_only $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)
io_only:  esmf_time wrfio_nf    \
	  wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int fftpack


######################
------------------------------------------------------------------------
Settings listed above are written to configure.wrf.
If you wish to change settings, please edit that file.
If you wish to change the default options, edit the file:
     arch/configure.defaults
NetCDF users note:
 This installation of NetCDF supports large file support.  To DISABLE large file
 support in NetCDF, set the environment variable WRFIO_NCD_NO_LARGE_FILE_SUPPORT
 to 1 and run configure again. Set to any other value to avoid this message.
  
*****************************************************************************
This build of WRF will use NETCDF4 with HDF5 compression
*****************************************************************************
 
Submitting the compilation to the express queue. Allow for about 40min to finish. Use the qstat command to check status.
39555237.gadi-pbs
[Pipeline] }
[Pipeline] // dir
[Pipeline] stage
Using the ‘stage’ step without a block argument is deprecated
Entering stage compile_WPS
Proceeding
[Pipeline] dir
Running in /home/561/ccc561/scratch/jenkins/workspace/WRF/WRF-Core/WPS
[Pipeline] {
[Pipeline] sh
+ ./run_compile -t
Will use NETCDF in dir: /apps/netcdf/4.7.1
Found what looks like a valid WRF I/O library in ../WRF
Found Jasper environment variables for GRIB2 support...
  $JASPERLIB = /usr/lib64
  $JASPERINC = /usr/include
------------------------------------------------------------------------
Please select from among the following supported platforms.

   1.  Linux x86_64, gfortran    (serial)
   2.  Linux x86_64, gfortran    (serial_NO_GRIB2)
   3.  Linux x86_64, gfortran    (dmpar)
   4.  Linux x86_64, gfortran    (dmpar_NO_GRIB2)
   5.  Linux x86_64, PGI compiler   (serial)
   6.  Linux x86_64, PGI compiler   (serial_NO_GRIB2)
   7.  Linux x86_64, PGI compiler   (dmpar)
   8.  Linux x86_64, PGI compiler   (dmpar_NO_GRIB2)
   9.  Linux x86_64, PGI compiler, SGI MPT   (serial)
  10.  Linux x86_64, PGI compiler, SGI MPT   (serial_NO_GRIB2)
  11.  Linux x86_64, PGI compiler, SGI MPT   (dmpar)
  12.  Linux x86_64, PGI compiler, SGI MPT   (dmpar_NO_GRIB2)
  13.  Linux x86_64, IA64 and Opteron    (serial)
  14.  Linux x86_64, IA64 and Opteron    (serial_NO_GRIB2)
  15.  Linux x86_64, IA64 and Opteron    (dmpar)
  16.  Linux x86_64, IA64 and Opteron    (dmpar_NO_GRIB2)
  17.  Linux x86_64, Intel compiler    (serial)
  18.  Linux x86_64, Intel compiler    (serial_NO_GRIB2)
  19.  Linux x86_64, Intel compiler    (dmpar)
  20.  Linux x86_64, Intel compiler    (dmpar_NO_GRIB2)
  21.  Linux x86_64, Intel compiler, SGI MPT    (serial)
  22.  Linux x86_64, Intel compiler, SGI MPT    (serial_NO_GRIB2)
  23.  Linux x86_64, Intel compiler, SGI MPT    (dmpar)
  24.  Linux x86_64, Intel compiler, SGI MPT    (dmpar_NO_GRIB2)
  25.  Linux x86_64, Intel compiler, IBM POE    (serial)
  26.  Linux x86_64, Intel compiler, IBM POE    (serial_NO_GRIB2)
  27.  Linux x86_64, Intel compiler, IBM POE    (dmpar)
  28.  Linux x86_64, Intel compiler, IBM POE    (dmpar_NO_GRIB2)
  29.  Linux x86_64 g95 compiler     (serial)
  30.  Linux x86_64 g95 compiler     (serial_NO_GRIB2)
  31.  Linux x86_64 g95 compiler     (dmpar)
  32.  Linux x86_64 g95 compiler     (dmpar_NO_GRIB2)
  33.  Cray XE/XC CLE/Linux x86_64, Cray compiler   (serial)
  34.  Cray XE/XC CLE/Linux x86_64, Cray compiler   (serial_NO_GRIB2)
  35.  Cray XE/XC CLE/Linux x86_64, Cray compiler   (dmpar)
  36.  Cray XE/XC CLE/Linux x86_64, Cray compiler   (dmpar_NO_GRIB2)
  37.  Cray XC CLE/Linux x86_64, Intel compiler   (serial)
  38.  Cray XC CLE/Linux x86_64, Intel compiler   (serial_NO_GRIB2)
  39.  Cray XC CLE/Linux x86_64, Intel compiler   (dmpar)
  40.  Cray XC CLE/Linux x86_64, Intel compiler   (dmpar_NO_GRIB2)

Enter selection [1-40] : ------------------------------------------------------------------------
Configuration successful. To build the WPS, type: compile
------------------------------------------------------------------------
39563873.gadi-pbs
[Pipeline] }
[Pipeline] // dir
[Pipeline] stage
Using the ‘stage’ step without a block argument is deprecated
Entering stage compile_UPP
Proceeding
[Pipeline] dir
Running in /home/561/ccc561/scratch/jenkins/workspace/WRF/WRF-Core/tests
[Pipeline] {
[Pipeline] dir
Running in /home/561/ccc561/scratch/jenkins/workspace/WRF/WRF-Core/tests/oct16
[Pipeline] {
[Pipeline] stage
Using the ‘stage’ step without a block argument is deprecated
Entering stage oct16
Proceeding
[Pipeline] sh
+ qsub -W block=true -v PROJECT,WRF_ROOT runtest.sh
39564265.gadi-pbs
[Pipeline] sh
+ module load cdo
+ unset _mlshdbg
+ '[' 0 = 1 ']'
+ unset _mlre _mlIFS
+ '[' -n x ']'
+ _mlIFS=' 	
'
+ IFS=' '
+ '[' -n '' ']'
++ /usr/bin/tclsh /opt/Modules/v4.3.0/libexec/modulecmd.tcl bash load cdo
+ eval 'MANPATH=/apps/cdo/1.9.10/share/man:/opt/pbs/default/share/man::;' export 'MANPATH;
CDO_ROOT=/apps/cdo/1.9.10;' export 'CDO_ROOT;
LOADEDMODULES=cdo/1.9.10;' export 'LOADEDMODULES;
_LMFILES_=/apps/Modules/modulefiles/cdo/1.9.10;' export '_LMFILES_;
MANPATH_modshare=:1:/apps/cdo/1.9.10/share/man:1:/opt/pbs/default/share/man:1;' export 'MANPATH_modshare;
MODULES_LMCONFLICT=cdo/1.9.10\&cdo\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars;' export 'MODULES_LMCONFLICT;
MODULES_LMCONFLICT_modshare=cdo/1.9.10\&cdo\&o/show-debug\&o/yes-show-debug\&o/use-show-debug\&o/enable-show-debug\&o/with-show-debug\&o/no-show-debug\&o/not-show-debug\&o/disable-show-debug\&o/without-show-debug\&o/append-paths\&o/yes-append-paths\&o/use-append-paths\&o/enable-append-paths\&o/with-append-paths\&o/no-append-paths\&o/not-append-paths\&o/disable-append-paths\&o/without-append-paths\&o/packaged-envvars\&o/yes-packaged-envvars\&o/use-packaged-envvars\&o/enable-packaged-envvars\&o/with-packaged-envvars\&o/no-packaged-envvars\&o/not-packaged-envvars\&o/disable-packaged-envvars\&o/without-packaged-envvars:1;' export 'MODULES_LMCONFLICT_modshare;
CDO_BASE=/apps/cdo/1.9.10;' export 'CDO_BASE;
CDO_VERSION=1.9.10;' export 'CDO_VERSION;
LOADEDMODULES_modshare=cdo/1.9.10:1;' export 'LOADEDMODULES_modshare;
_LMFILES__modshare=/apps/Modules/modulefiles/cdo/1.9.10:1;' export '_LMFILES__modshare;
PATH=/apps/cdo/1.9.10/bin:/home/561/ccc561/perl5/bin:/g/data/hh5/public/apps/miniconda3/envs/analysis3-21.10/condabin:/opt/pbs/default/bin:/opt/nci/bin:/opt/bin:/opt/Modules/v4.3.0/bin:/bin:/usr/bin;' export 'PATH;
PATH_modshare=/bin:1:/g/data/hh5/public/apps/miniconda3/envs/analysis3-21.10/condabin:1:/usr/bin:1:/apps/cdo/1.9.10/bin:1:/home/561/ccc561/perl5/bin:1:/opt/pbs/default/bin:1:/opt/bin:1:/opt/Modules/v4.3.0/bin:1:/opt/nci/bin:1;' export 'PATH_modshare;
test' '0;'
++ MANPATH=/apps/cdo/1.9.10/share/man:/opt/pbs/default/share/man::
++ export MANPATH
++ CDO_ROOT=/apps/cdo/1.9.10
++ export CDO_ROOT
++ LOADEDMODULES=cdo/1.9.10
++ export LOADEDMODULES
++ _LMFILES_=/apps/Modules/modulefiles/cdo/1.9.10
++ export _LMFILES_
++ MANPATH_modshare=:1:/apps/cdo/1.9.10/share/man:1:/opt/pbs/default/share/man:1
++ export MANPATH_modshare
++ MODULES_LMCONFLICT='cdo/1.9.10&cdo&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars'
++ export MODULES_LMCONFLICT
++ MODULES_LMCONFLICT_modshare='cdo/1.9.10&cdo&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars:1'
++ export MODULES_LMCONFLICT_modshare
++ CDO_BASE=/apps/cdo/1.9.10
++ export CDO_BASE
++ CDO_VERSION=1.9.10
++ export CDO_VERSION
++ LOADEDMODULES_modshare=cdo/1.9.10:1
++ export LOADEDMODULES_modshare
++ _LMFILES__modshare=/apps/Modules/modulefiles/cdo/1.9.10:1
++ export _LMFILES__modshare
++ PATH=/apps/cdo/1.9.10/bin:/home/561/ccc561/perl5/bin:/g/data/hh5/public/apps/miniconda3/envs/analysis3-21.10/condabin:/opt/pbs/default/bin:/opt/nci/bin:/opt/bin:/opt/Modules/v4.3.0/bin:/bin:/usr/bin
++ export PATH
++ PATH_modshare=/bin:1:/g/data/hh5/public/apps/miniconda3/envs/analysis3-21.10/condabin:1:/usr/bin:1:/apps/cdo/1.9.10/bin:1:/home/561/ccc561/perl5/bin:1:/opt/pbs/default/bin:1:/opt/bin:1:/opt/Modules/v4.3.0/bin:1:/opt/nci/bin:1
++ export PATH_modshare
++ test 0
+ _mlstatus=0
+ '[' -n x ']'
+ IFS=' 	
'
+ unset _mlre _mlv _mlrv _mlIFS
+ '[' -n '' ']'
+ unset _mlshdbg
+ return 0
+ cdo diffn wrfout_d01_2016-10-06_00:00:00 /g/data/sx70/data/KGO/4.4/oct16/wrfout_d01_2016-10-06_00:00:00
Warning (cdf_set_var): Inconsistent variable definition for XLAT!
Warning (cdf_set_var): Inconsistent variable definition for XLONG!
Warning (cdf_set_var): Inconsistent variable definition for XLAT_U!
Warning (cdf_set_var): Inconsistent variable definition for XLONG_U!
Warning (cdf_set_var): Inconsistent variable definition for XLAT_V!
Warning (cdf_set_var): Inconsistent variable definition for XLONG_V!
Warning (cdfCheckVars): Unsupported data type (char/string), skipped variable Times!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdfInqContents): Coordinates variable XTIME can't be assigned!
Warning (cdf_read_coordinates): Time varying grids unsupported, using grid at time step 1!
cdo    diffn: Open failed on >/g/data/sx70/data/KGO/4.4/oct16/wrfout_d01_2016-10-06_00:00:00<
              No such file or directory
[Pipeline] }
[Pipeline] // dir
[Pipeline] }
[Pipeline] // dir
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE